Skinny Pumpkin Quinoa Muffins
If you’re looking for a cozy, delicious treat that makes mornings feel special, these Skinny Pumpkin Quinoa Muffins are just what you need! They’re moist, flavorful, and pack a nutritious punch with quinoa and pumpkin. This recipe has become a staple in my kitchen because they’re not only perfect for busy weekdays but also a hit at family gatherings. Imagine the joy of biting into one of these muffins, knowing it’s both tasty and healthy!
What I love most about these muffins is how easy they are to make. You can whip up a batch in no time and enjoy them fresh from the oven or save some for later. Plus, they’re wonderfully versatile—great for breakfast, snacks, or even dessert!
Why You’ll Love This Recipe
- Super Easy to Prepare: With just a few simple steps, you’ll have a batch of muffins ready to go. Perfect for beginner bakers!
- Family-Friendly: Kids and adults alike will love the sweet pumpkin flavor and soft texture. It’s an easy way to sneak in some nutrition.
- Make-Ahead Convenience: These muffins store well in the fridge or freezer. Make them ahead of time for quick breakfasts throughout the week.
- Wholesome Ingredients: Packed with quinoa, oat flour, and pumpkin puree, these muffins are not just tasty but also nourishing.

Ingredients You’ll Need
For these Skinny Pumpkin Quinoa Muffins, you’ll use simple and wholesome ingredients that you might already have in your pantry. Here’s what you need to gather:
Wet Ingredients
- 1 tablespoon flaxseed meal
- 3 tablespoons water
- 1/2 cup mashed banana (1 large or 2 small)
- 3/4 cup pumpkin puree
- 1/4 cup non-dairy milk
- 1/4 cup maple syrup
Dry Ingredients
- 1 1/4 cup oat flour (oats ground in a blender)
- 1/2 cup quinoa flakes
- 1/2 cup blanched almond flour
- 1/4 cup coconut sugar
- 2 teaspoons baking powder
- 1 teaspoon cinnamon
- 1/2 teaspoon vanilla bean powder (or 1 teaspoon extract)
- 1/2 teaspoon nutmeg
- 1/4 teaspoon ginger
- 1/4 teaspoon salt
These ingredients combine beautifully to create muffins that are both satisfying and guilt-free.
Variations
One of the best things about this muffin recipe is its flexibility! You can easily customize it based on your tastes or what you have on hand.
- Add Chocolate Chips: For a sweeter twist, mix in some dairy-free chocolate chips before baking.
- Incorporate Nuts: Chopped walnuts or pecans add a delightful crunch and extra nutrients.
- Spice it Up: Consider adding a pinch of cayenne pepper for an unexpected kick!
- Use Different Fruits: Swap out the banana for applesauce or another favorite fruit puree for different flavors.
How to Make Skinny Pumpkin Quinoa Muffins
Step 1: Preheat the Oven
Start by heating your oven to 350ºF. This ensures that your muffins bake evenly and come out perfectly fluffy.
Step 2: Prepare the Flax Egg
Combine the flaxseed meal with water in a small bowl and set it aside. This mixture will gel up and act as a fantastic egg substitute that binds the ingredients together.
Step 3: Mix Dry Ingredients
In a large mixing bowl, whisk together all your dry ingredients—this includes oat flour, quinoa flakes, almond flour, coconut sugar, baking powder, cinnamon, nutmeg, ginger, and salt. Mixing them well helps to distribute the leavening agents evenly throughout the batter.
Step 4: Combine Wet Ingredients
In another bowl, mash your banana and mix it with pumpkin puree, non-dairy milk, maple syrup, and the gelling flax egg. Whisk until everything is combined; this step adds moisture and sweetness to your muffins.
Step 5: Mix Wet into Dry
Pour the wet ingredients into your dry mixture and stir until everything is just combined. Don’t worry if the batter seems thick—it should be soft enough to spoon into muffin cups!
Step 6: Fill Muffin Tin
Spoon your batter into prepared muffin cups until each is about three-quarters full. If you have any empty cups in your tin, fill them halfway with water so they cook evenly.
Step 7: Bake
Place your muffin tin on the center rack of the oven and bake for 23-25 minutes. Check doneness by inserting a cake tester; it should come out clean when done.
Step 8: Cool Down
Let your muffins cool in the pan for about five minutes before transferring them to a wire rack to cool completely. If you can’t wait to dig in, feel free to reheat them slightly before serving!
Enjoy these delightful Skinny Pumpkin Quinoa Muffins as part of your morning routine or as an afternoon snack! They’re sure to become a new favorite in your home!
Pro Tips for Making Skinny Pumpkin Quinoa Muffins
Making muffins can be a delightful experience, especially when you know a few tricks to ensure they turn out perfectly every time. Here are some helpful tips to elevate your baking game:
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Use fresh ingredients: Freshly opened baking powder and spices enhance the flavor and rise of your muffins, ensuring they’re as fluffy and delicious as possible.
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Don’t overmix the batter: Mixing too much can create dense muffins. Stir just until combined; it’s okay if there are a few lumps!
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Let them cool properly: Cooling your muffins on a wire rack prevents them from becoming soggy. The air circulation helps maintain their perfect texture.
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Experiment with add-ins: Feel free to toss in some chopped nuts, dried fruits, or chocolate chips for extra flavor and texture. Just remember to adjust baking time if you add heavier ingredients.
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Store correctly: Keep any leftovers in an airtight container at room temperature for up to 3 days or freeze them for later enjoyment. This keeps them moist and flavorful!
How to Serve Skinny Pumpkin Quinoa Muffins
These muffins are not only healthy but also versatile enough to serve in various delightful ways. Here’s how you can present and enjoy them!
Garnishes
- Pumpkin seeds: Sprinkle some toasted pumpkin seeds on top of your muffins right before baking for a crunchy texture and nutty flavor.
- Maple drizzle: A light drizzle of pure maple syrup on top adds an extra touch of sweetness that’s simply irresistible.
Side Dishes
- Fresh fruit salad: A colorful mix of seasonal fruits complements the warm spices in the muffins, providing a refreshing contrast.
- Yogurt parfait: Layering dairy-free yogurt with granola and berries creates a wholesome breakfast that pairs beautifully with the muffins.
- Nut butter spread: Serve with almond or peanut butter on the side for a protein boost that makes these muffins even more filling.
- Herbal tea: A warm cup of herbal tea enhances the cozy flavors of the pumpkin muffins, making it a perfect fall treat.
Enjoy your Skinny Pumpkin Quinoa Muffins as part of a balanced meal or snack, and don’t hesitate to get creative with your serving ideas!

Make Ahead and Storage
These Skinny Pumpkin Quinoa Muffins are perfect for meal prep! You can make a batch ahead of time to enjoy them throughout the week or even freeze them for later. Here’s how to store and reheat your delicious muffins.
Storing Leftovers
- Store cooled muffins in an airtight container at room temperature for up to 3 days.
- For longer storage, place them in the refrigerator for up to a week.
Freezing
- Allow muffins to cool completely before freezing.
- Wrap each muffin individually in plastic wrap or aluminum foil.
- Place wrapped muffins in a freezer-safe bag or container and freeze for up to 3 months.
Reheating
- To reheat from frozen, simply thaw overnight in the refrigerator or on the countertop for a few hours.
- Warm in the microwave for 15-30 seconds or toast them in a toaster oven until heated through.
FAQs
Here are some common questions you may have about these muffins!
Can I use other flours instead of oat flour in Skinny Pumpkin Quinoa Muffins?
Yes! You can substitute oat flour with whole wheat flour or gluten-free flour blends if you prefer. Just ensure the consistency is similar.
How do I make Skinny Pumpkin Quinoa Muffins vegan-friendly?
This recipe is already vegan-friendly as it uses flaxseed meal as an egg substitute! Enjoy these muffins knowing they’re plant-based.
Can I add nuts or chocolate chips to my Skinny Pumpkin Quinoa Muffins?
Absolutely! Feel free to fold in some chopped nuts or dairy-free chocolate chips into the batter before baking for added flavor and texture.
How long do Skinny Pumpkin Quinoa Muffins last?
When stored properly, these muffins can last up to 3 days at room temperature or up to a week in the fridge. They also freeze well for up to 3 months!
Final Thoughts
I hope you enjoy making these delightful Skinny Pumpkin Quinoa Muffins as much as I do! They’re not only healthy but also bursting with fall flavors, making them a wonderful snack or breakfast option. Whether you enjoy them fresh out of the oven or warmed up later, I’m sure they’ll become a favorite in your home. Happy baking, and don’t forget to share your experience!
Skinny Pumpkin Quinoa Muffins
Indulge in the delightful flavors of Skinny Pumpkin Quinoa Muffins, a perfect blend of health and taste that elevates your morning routine or snack time. These muffins are moist, fluffy, and packed with nutritious ingredients like quinoa and pumpkin puree, making them an ideal choice for anyone looking to enjoy a guilt-free treat. Easy to prepare, they require minimal effort and can be customized with your favorite mix-ins like nuts or dairy-free chocolate chips. Whether enjoyed fresh from the oven or stored for meal prep, these muffins are sure to become a beloved staple in your kitchen.
- Prep Time: 15 minutes
- Cook Time: 25 minutes
- Total Time: 40 minutes
- Yield: Makes about 12 muffins 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
Ingredients
- 1 tablespoon flaxseed meal
- 3 tablespoons water
- 1/2 cup mashed banana
- 3/4 cup pumpkin puree
- 1/4 cup non-dairy milk
- 1/4 cup maple syrup
- 1 1/4 cup oat flour
- 1/2 cup quinoa flakes
- 1/2 cup blanched almond flour
- 1/4 cup coconut sugar
- 2 teaspoons baking powder
- 1 teaspoon cinnamon
- 1/2 teaspoon vanilla bean powder (or 1 teaspoon extract)
- 1/2 teaspoon nutmeg
- 1/4 teaspoon ginger
- 1/4 teaspoon salt
Instructions
- Preheat the oven to 350ºF.
- In a small bowl, combine flaxseed meal and water; let it sit to thicken.
- In a large bowl, whisk together dry ingredients: oat flour, quinoa flakes, almond flour, coconut sugar, baking powder, cinnamon, nutmeg, ginger, and salt.
- In another bowl, mash banana and mix with pumpkin puree, non-dairy milk, maple syrup, and flax mixture until smooth.
- Pour wet ingredients into dry ingredients; stir until just combined.
- Spoon batter into muffin cups about three-quarters full and bake for 23-25 minutes until a toothpick comes out clean.
- Let cool before serving.
Nutrition
- Serving Size: 1 muffin (60g)
- Calories: 140
- Sugar: 8g
- Sodium: 120mg
- Fat: 6g
- Saturated Fat: 0.5g
- Unsaturated Fat: 5g
- Trans Fat: 0g
- Carbohydrates: 20g
- Fiber: 3g
- Protein: 3g
- Cholesterol: 0mg
